miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|74517793|gb|DT732825.1|DT732825 CTTCTTCTCAAAAAATTAACAATGGCTTCAATGACTACTGCTTTCACTTCTCATCTTTCTTCCAAAATCAAAACCCCTTT
CTTAGATAACCAATCATCTTTCCATGTCACTCCATCTCGCATCCAACTCACTCGTTCATCTTCCCCAAACACTCACATCA
CCATGTCTTCATCATCATCATCATCATCTTCATCTTATGATCTATCTTCCTTCAAATTTGAACCAATTAAGGAATCCATT
GTATCACGTGAGATGACTCGCAGATACATGATGGATATGATTACATATGCTGACACTGATGTTGTTGTTGTTGGAGCAGG
TTCAGCAGGTCTTTCTTGTGCTTATGAAATGAGCAAAAACCCTAACATCAACATCGCTATTATCGAACAATCTGTCAGTC
CTGGTGGTGGTGCTTGGTTAGGTGGTCAGCTTTTTTCTGCCATGGTTGTTCGCAAACCTGCTCACATCTTCCTTGATGAA
CTCGGTGTTGAATACGATGAACAAGACACCTATGTTGTTATCAAGCACGCTGCCTTGTTTACATCCACAATCATGTCTAA
GCTTTTGGCTAAACCAAATGTGAAACTTTTTAATGCTGTTGCTGCTGAGGATTTGATCGTGAAAGAAGGTAAAGTTGCTG
GGGTTGTCACAAATTGGGCTTTGGTTTCTATGAATCATGATACACAATCATGTATGGATCCAAATGTAATGGAAGCTAAG
ATTGTTGTCAGTTCTTGTGGCCATGATGGTCCTTTTGGTGCTACTGGTGTGAAGAGGCTGAAGAGCATTGGAATGATTGA
TTCTG




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  367 bits (941), Expect = e-101
 Identities = 196/262 (74%), Positives = 207/262 (79%), Gaps = 2/262 (0%)
 Frame = +1

Query: 22  MASM-TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXX 198
           MA+M +TAF   +SS     F    SSFH  P    L R                     
Sbjct: 1   MAAMASTAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPP 57

Query: 199 XXXX-FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINI 375
                FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI I
Sbjct: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117

Query: 376 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIM 555
           AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIM
Sbjct: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177

Query: 556 SKLLAKPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 735
           SKLLA+PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSS
Sbjct: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 736 CGHDGPFGATGVKRLKSIGMID 801
           CGHDGPFGATGVKRLKSIGMI+
Sbjct: 238 CGHDGPFGATGVKRLKSIGMIE 259